PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.388630.1
Common NameCsa_7G378380, LOC101205598
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 692aa    MW: 76190.1 Da    PI: 5.8885
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.388630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000545235601355
                     HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                     R+ i +++ eLrel+P+ a      K s  + Le++++++  Lq
  Cucsa.388630.1 523 RQLIQDRIKELRELVPNgA------KCSIDSLLERTIKHMLFLQ 560
                     67799************77......7777779999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.7E-376167IPR025610Transcription factor MYC/MYB N-terminal
Gene3DG3DSA:3.30.450.402.0E-479131IPR029016GAF domain-like
CDDcd000830.00425504560No hitNo description
PROSITE profilePS5088811.211510559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.7E-4523565IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MGTTDLHQIL KSFCCNSEWK YAVFWKLKHR ARMVLTWEDG YYDNSEQHEP PEGKFFRKTL  60
ETFYDGHYSH DALGLAVAKM SYHVYSLGEG IVGQVAVTGK HQWITADEQI PNFSSTIEYC  120
DGWQTQFSAG IKTIVVVAVV PHGVLQLGSL DKVTEDVNLV TRIRNVFLTL QESSAGEIKP  180
MHSCKSSGYM ADIPSRSLAT EKGEVASVSK NVGLELSGSE AFESLTTKPD GINVENFKSQ  240
VRLLDDRMCG GEPSGCKDKA VGLKQKINVQ SQNSTMDMVN ICGNLLPAEK IMTNDAYFSM  300
NPHPSSAYDG VNHNGMFIRT NHTEMYLQND MEASETIEMY PSNTSLKFPA GYELHEVLGP  360
AFLKDALYLD WQTEYVLGGK AFELSEGMSG SQLTSDSPTE RLLEAVVADV CHSGSDVKSD  420
TSLCKSGQSL LTTERIPEPS TNVTTSACSE GYSMGQSQTS FTGEDMQNSL SSSGVCGVMS  480
PKGFSSTYSG TGSEHLDKSS EPAKNSKRRA RPGESSRPRP RDRQLIQDRI KELRELVPNG  540
AKCSIDSLLE RTIKHMLFLQ GITKHADKLT KCANMKLHQK GSGMLGTSDT DQGSSWAVEV  600
GGQLKVCSII VENLNKNGQI LVEMLCEECS HFLEIAEAIR SLGLTILKGI TEAHGEKTWI  660
CFVVEGENNR NIHRMDILWS LVQILQRSST M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659263.10.0PREDICTED: transcription factor bHLH155 isoform X1
TrEMBLA0A0A0K7510.0A0A0A0K751_CUCSA; Uncharacterized protein
STRINGVIT_07s0005g03070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50272022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-172conserved peptide upstream open reading frame 7
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]